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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015887016.1_cds_XP_016441274.1_36651
CDS Infomation

[gene=LOC107766898] [db_xref=GeneID:107766898] [protein=aspartic proteinase A1-like isoform X2] [protein_id=XP_016441274.1] [location=complement(join(111094..111178,111311..111399,111490..111609,111677..111830,112198..112262,112353..112466,112570..112634,112707..112746,112838..113006,113120..113232,113336..113430,113540..113600,113894..114259))] [gbkey=CDS]
Sequence

ATGGAAAGGAAGCATCTTTGGGCTGCTCTCCTTTTATTGGCCATTGCCTGCTTTGTATTT
CCTGCTTCCTCTGATAGTTTGCTAAGAATTAGTCTGAAGAAGCGACAATTAGATATCAGT
AGCTTAAATGTAGCCAATGTAGCAAGACTTGAAGACAGATATGGAAAGCATGTGATGAAG
GACATAGAGAAGAAGAAGAAGAAGAAGAAATCTGACACAAATTCAGATATAGTGTCCTTA
AAGAACTACTTGGATGCTCAATATTATGGAGATATTAGTATTGGTTCACCCCCTCAAAAT
TTCACTGTCATATTTGATACAGGAAGTTCTAATCTCTGGGTTCCATCATCAAGATGTTAT
TTCTCTATTGCATGCTGGATCCATTCCAAATACAAGGCAAGGAAGTCTAGTACATACACA
AAAAAAGGAGAATCTTGTTCAATCCACTATGGATCTGGATCAATTTCAGGATTTCTCAGT
CAAGATAATGTTCAAGTTGGCGATCTTGTAGTCACGGATCAGGTCTTTATTGAGGCGACA
CGGGAATCAAGTGTTACATTTATAGTTGCAAAGTTTGATGGAATACTTGGGCTTGGTTTC
AAGGAAATTGCTGTTGGAAACACTACACCTGTCTGGTACAATATGGTGAAGCAAGATCTC
GTAAAGGAGCCTGTGTTCTCTTTCTGGCTTAATCGCGATATAAATGCAAAAGAGGGAGGT
GAACTTGTTTTTGGTGGTGTTGATCCAAAACACTTCAAGGATAAACATACTTATGTTCCT
TTGACTCAGAAAGGTTACTGGCAGTTTAAAATGGGAGATTTCTCTATTGGGAACCAATCA
ACAGGCTTCTGTGAAGGCGGTTGTGCTGCTATAGTTGATTCTGGAACATCATTGCTTGCT
GGTCCAACTGCTGTTGTGACACAAGTCAACCATGCCATTGGAGCAGAAGGAGTATTGAGC
ATGGAATGTAAAGAAACCATTTCTCAATATGGGGAAATGATTTGGGATTTACTAGTATCA
GGGGTCACACCAGATCAAATTTGTTTACAAGTAGGTTTATGTTATCTTAATGGAGCTCAG
CATTTGAGCTCGAATATCAGAAGTGTGGTTGAGAAGGAAAATGAAGGAAGTTCCATAGGA
GAGGCCCCATTGTGCACTGCCTGTGAGATGGCTGTAATTTGGATGCAGAACCAGCTGAAA
CAGAAGACAACAAAGGAGAGTGTGCTAGAATATGTGAATCAGCTTTGTGAGAAATTACCA
AGTCCTATGGGGCAATCCGTAATCGACTGCAATAGCATATCATCCATGCCAAATGTTACA
TTCAATATTGGTGATAAGGATTTTGTCCTGACTCCAGATCAGTATATTTTGAAAACTGGA
GAGGGGATTGCTACCATTTGCCTCAGTGGGTTTGTTGCTTTGGATGTGCCACCACCTCGT
GGTCCTCTTTGGATTCTTGGTAATGTATTCATGGGGGTGTATCATACTGTATTTGACTAT
GGTAATCTTCAACTGGGTTTTGCTGAAGCTGCGTGA

Peptide Sequence

PEP ID

XP_016441274.1
PEP Infomation

PREDICTED: aspartic proteinase A1-like isoform X2 [Nicotiana tabacum]
Sequence

MERKHLWAALLLLAIACFVFPASSDSLLRISLKKRQLDISSLNVANVARLEDRYGKHVMK
DIEKKKKKKKSDTNSDIVSLKNYLDAQYYGDISIGSPPQNFTVIFDTGSSNLWVPSSRCY
FSIACWIHSKYKARKSSTYTKKGESCSIHYGSGSISGFLSQDNVQVGDLVVTDQVFIEAT
RESSVTFIVAKFDGILGLGFKEIAVGNTTPVWYNMVKQDLVKEPVFSFWLNRDINAKEGG
ELVFGGVDPKHFKDKHTYVPLTQKGYWQFKMGDFSIGNQSTGFCEGGCAAIVDSGTSLLA
GPTAVVTQVNHAIGAEGVLSMECKETISQYGEMIWDLLVSGVTPDQICLQVGLCYLNGAQ
HLSSNIRSVVEKENEGSSIGEAPLCTACEMAVIWMQNQLKQKTTKESVLEYVNQLCEKLP
SPMGQSVIDCNSISSMPNVTFNIGDKDFVLTPDQYILKTGEGIATICLSGFVALDVPPPR
GPLWILGNVFMGVYHTVFDYGNLQLGFAEAA

Transcript Sequence

Gene sequence data has not been registered.